BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations.

TitleBioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations.
Publication TypeJournal Article
Year of Publication2007
AuthorsKerhornou A, Guigó R
JournalBioinformatics
Volume23
Pagination1831–1833
Date PublishedJul
Abstract

Here we present a computational protocol to analyze the promoter regions of a given set of co-expressed genes, and its implementation through the use of Web services technologies. This protocol aims to cluster a set of co-regulated genes in subsets of genes showing similar configurations of transcription factor binding sites. All the steps of this protocol have been developed as web services that are compliant with BioMoby specifications. AVAILABILITY: {http://genome.imim.es/cgi-bin/moby/GeneClustering_DataSubmission.cgi}. SUPPLEMENTARY INFORMATION: Supplementary data are available at {http://genome.imim.es/webservices/}

URLhttp://dx.doi.org/10.1093/bioinformatics/btm25
DOI10.1093/bioinformatics/btm252