Using geneid to identify genes.

TitleUsing geneid to identify genes.
Publication TypeJournal Article
Year of Publication2007
AuthorsBlanco E, Parra G, Guig├│ R
JournalCurrent protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]
VolumeChapter 4
PaginationUnit 4.3
Date PublishedJun
Abstract

This unit describes the usage of geneid, an efficient gene-finding program that allows for the analysis of large genomic sequences, including whole mammalian chromosomes. These sequences can be partially annotated, and geneid can be used to refine this initial annotation. Training geneid is relatively easy, and parameter configurations exist for a number of eukaryotic species. Geneid produces output in a variety of standard formats. The results, thus, can be processed by a variety of software tools, including visualization programs. Geneid software is in the public domain, and it is undergoing constant development. It is easy to install and use. Exhaustive benchmark evaluations show that geneid compares favorably with other existing gene finding tools.

URLhttp://dx.doi.org/10.1002/0471250953.bi0403s1
DOI10.1002/0471250953.bi0403s18