Resumé

I obtained my PhD in Bioinformatics, Structural Biology and Genomics from the University of Marseilles (southern France) in July 2005. I worked mainly on the in silico identification of cis-regulatory elements in higher Eukaryotes, more particularly in drosophila, but also on the development of methods relying on Gene Ontology, in the bioinformatics group co-directed by Denis Thieffry and Bernard Jacq in the Developmental Biology Institute of Marseille-Luminy (IBDML).

Then, I went as a postdoctoral researcher to the Center for Molecular Medicine and Therapeutics (CMMT) in Vancouver (Canada) until November 2006. I was working there on the development of a cis-regulatory module de novo discovery algorithm in the group directed by Wyeth Wasserman.

Since February 2007, I joined the group of Roderic Guigó at the Center for Genomic Regulation (CRG) in Barcelona (Catalunya, northern Spain) where I work as a senior postdoctoral researcher on various projects related to transcriptional regulation.

Publications

  • Buschbeck M, Uribesalgo I, Wibowo I, Rué P, Martin D, Gutierrez A, Morey L, Guigó R, López-Schier H, Di Croce L.
    The histone variant macroH2A is an epigenetic regulator of key developmental genes.
    Nat Struct Mol Biol. 2009 Sep 6. PMID:19734898
  • Boj SF, Servitja JM, Martin D, Rios M, Talianidis I, Guigo R, Ferrer J.
    Functional targets of the monogenic diabetes transcription factors HNF-1alpha and HNF-4alpha are highly conserved between mice and humans.
    Diabetes. 2009 May;58(5):1245-53. Epub 2009 Feb 2. PMID:19188435
  • Baudot A(*), Martin D(*), Mouren P, Chevenet F, Guénoche A, Jacq B, Brun C.
    PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks.
    Bioinformatics. 2006 Jan 15;22(2):248-50. Epub 2005 Nov 3. PMID:16269417
  • Martin D, Brun C, Remy E, Mouren P, Thieffry D, Jacq B.
    GOToolBox : functional investigation of gene datasets based on Gene Ontology.
    Genome Biology. 2004;5(12):R101. Epub 2004 Nov 26. PMID:15575967
  • Martin D, Ghattas B, Thieffry D.
    Prediction of expression from genomic sequences.
    Medecine/Sciences. 2004 Nov;20(11):1036-40. [French]. PMID:15525501
  • Brun C, Chevenet F(*), Martin D(*), Wojcik J, Guenoche A, Jacq B.
    Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network.
    Genome Biology. 2003;5(1):R6. Epub 2003 Dec 15. PMID:14709178
  • Solano PJ, Mugat B, Martin D, Girard F, Huibant JM, Ferraz C, Jacq B, Demaille J, Maschat F.
    Genome-wide identification of in vivo Drosophila Engrailed-binding DNA fragments and related target genes.
    Development. 2003 Apr;130(7):1243-54. PMID:12588842

(*) = authors contributing equally to the work

Publications

2012

2011

2009

David Martin

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Joined: 2009-09-02

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